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Artificial Intelligence in Bioinformatics · LearnSpace
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Artificial Intelligence in Bioinformatics

Курс от Taipei Medical University
Начальный≈ 13.1 чАнглийский
О курсеНавыкиПрограммаПреподаватели

О курсе

This course provides a comprehensive introduction to the application of artificial intelligence in bioinformatics, bridging computational methods with biological data analysis. Using Weka, a widely adopted machine learning software suite, learners will gain hands-on, practice-oriented experience alongside a solid theoretical foundation. Learners will explore the four core branches of bioinformatics—sequence analysis, structural bioinformatics, gene and protein expression, and network and systems biology—while gaining experience with widely used public bioinformatics databases. The course then covers the fundamentals of machine learning and deep learning, including data preparation, feature extraction, model evaluation, and key algorithms such as K-Nearest Neighbors, Random Forest, and Support Vector Machines. Through practical exercises in Weka and WekaDeeplearning4j, learners will build, tune, and evaluate predictive models for real-world bioinformatics problems, including protein function prediction and electron transport protein classification, using techniques such as Convolutional Neural Networks and Recurrent Neural Networks. By the end of this course, learners will be equipped with both the theoretical foundation and practical skills needed to apply AI-driven approaches to genomics and proteomics research, and to communicate their findings through effective scientific writing.

Навыки, которые вы освоите

BioinformaticsMolecular BiologyDeep LearningFeature EngineeringMachine Learning AlgorithmsMachine Learning MethodsClassification AlgorithmsArtificial Intelligence and Machine Learning (AI/ML)Model TrainingBiologyData AnalysisApplied Machine LearningPredictive ModelingRandom Forest AlgorithmNatural Language ProcessingInformaticsSupervised LearningAI WorkflowsTechnical CommunicationArtificial Intelligence

Программа курса

6 модулей · 69 учебных материалов

01Basic concepts of AI in bioinformatics data12 материалов

Introduction

Welcome and Weka InstallationЧтениеWhy We Learn AI Bioinformatics?Чтение

Video Lectures

1.1 Overview on bioinformaticsВидео1.2 Cell, Genetics, DNA sequence introductionВидео

Учитесь у экспертов

Nguyen Quoc Khanh Le

Преподаватель курса

Artificial Intelligence in Bioinformatics
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Обучение на Coursera

≈ 13.1 ч

6 модулей

Язык: Английский

Часть программы вашего университета
1.3 Basic of Artificial IntelligenceВидео
1.4 AI in protein function predictionВидео
1.5 Public resources for bioinformaticsВидео
1.6 Bioinformatics dataВидео
1.7 Collecting bioinformatics dataВидео

Reading and Assessment

Machine learning in bioinformaticsЧтениеPractice of Module 1 : Overview on BioinformaticsЗаданиеReview of basic concepts of AI in bioinformaticsЗадание
02Artificial Intelligence: fundamentals and applications12 материалов

Video Lectures

Artificial Intelligence Fundamentals and ApplicationsЧтение2.1 AI branchesВидео2.2 Types of machine learningВидео2.3 Different types of learning modelВидео2.4 Machine learning implementationВидео

Weka domo

2.5 Weka demonstrationВидео2.6 Learning process in machine learningВидео2.7 Confusion matrix and multiclassificationВидео2.8 Common algorithmsВидео

Reading and Assessment

Protein feature generation using iFeatureЧтениеOverview of machine learningЗаданиеReview of machine learningЗадание
03Bioinformatics feature engineering11 материалов

Video Lectures

Course Module Introduction: Bioinformatics Feature EngineeringЧтение3.1 AI-based bioinformatics workflowВидео3.2 AI general workflowВидео3.3 Bioinformatics feature extractionВидео3.4 Demonstration on extracting bioinformatics featuresВидео

Reading and discussion

Feature Engineering: Handcrafted vs. Learned FeaturesDIALOGUEDeep learningЧтениеET-GRU: using multi-layer gated recurrent units to identify electron transport proteinsЧтениеUsing deep neural networks and biological subwords to detect protein S-sulfenylation sitesЧтение

Weekly Assessment: bioinformatics feature engineering

Overview of bioinformatics feature engineeringЗаданиеReflect what you have learntЗадание
04Feature Learning8 материалов

Video Lectures

Feature learningЧтение4.1 Bioinformatics Case StudyВидео4.2 Data for Weka DemonstrationВидео4.3 Save and Load ModelВидео4.4 Parameter Tuning in WekaВидео4.5 Convert CSV into ARFF using WekaВидео

Weekly Assessment: Feature Learning

Overview of Feature LearningЗаданиеReview of Feature LearningЗадание
05Deep Learning12 материалов

Video Lectures

Deep Learning Чтение5.1 Fundamentals of Deep LearningВидео5.2 Definition and Characteristic of Deep learningВидео5.3 Convolutional Neural Network (CNN)Видео5.4 Recurrent Neural Network (RNN)Видео5.5 Natural Language ProcessingВидео5.6 Deep Learning Implementation in WekaВидео5.7 Exploring Deep Learning FrameworksВидео

Reading and Assessment

Deep Learning Reasoning PracticeDIALOGUEA review of deep learning applications in human genomicsЧтениеOverview of deep learningЗаданиеReview of deep learningЗадание
06Writing Bioinformatics Papers14 материалов

Video Lectures

Writing Bioinformatics PapersЧтение6.1 Bioinformatics Paper FlowchartВидео6.2 Workflow: Data CollectionВидео6.3 Workflow: Feature ExtractionВидео6.4 Workflow: Data VisualizationВидео6.5 Feature VisualizationВидео6.6 Bioinformatics Paper ExampleВидео6.7 A Novel Approach for Feature Generation and Model ConstructionВидео6.8 Deep Learning for Astune Ventilation Site Detection in ProteinsВидео

Required Readings

Grand Challenges in Bioinformatics Data VisualizationЧтениеOverview of writing bioinformatics papersЗаданиеReview of writing bioinformatics papersЗадание

Summative assessment

Final Course AssessmentЗаданиеCourse feedback and further learningОбсуждение