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Breeding Programme Modelling with AlphaSimR · LearnSpace
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Breeding Programme Modelling with AlphaSimR

Курс от The University of Edinburgh
Средний≈ 29.4 чАнглийский
О курсеНавыкиПрограммаПреподаватели

О курсе

Breeding programmes are key to the genetic improvement of plant varieties and animal breeds used in agriculture. This unique course shows how to model an existing or new breeding programme and the evaluation of alternative breeding scenarios. This online course will equip participants with an understanding of computer modelling of breeding programmes to enhance genetic improvements in agriculture. The modelling is done through the AlphaSimR package. The package provides a set of functions that represent breeding activities. The combination of these functions in an R script allows the modelling of simple and arbitrarily complex breeding programmes. It also allows evaluation of the effects of alternative breeding scenarios on the rate of genetic improvement and other key performance indicators. The course is taught by experts in the field and is applicable to a range of breeding programmes as demonstrated through local and global case studies.

Навыки, которые вы освоите

Simulation and Simulation SoftwareSimulationsBiologyBioinformaticsMathematical ModelingBiotechnologyLife SciencesMolecular, Cellular, and MicrobiologyQuantitative ResearchR ProgrammingScripting

Программа курса

6 модулей · 95 учебных материалов

01Get Started7 материалов
Welcome to the Course!ЧтениеMeet the TeamЧтениеCourse StructureЧтениеCertificationЧтение

Учитесь у экспертов

Gregor Gorjanc

Преподаватель курса

Breeding Programme Modelling with AlphaSimR
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Обучение на Coursera

≈ 29.4 ч

6 модулей

Язык: Английский

Часть программы вашего университета
Getting HelpОбсуждение
Your Learning CommunityОбсуждение
Upgrade to Continue Your Journey!Чтение
02Week 1 - Introduction to breeding programme modelling8 материалов
The Big QuestionЧтениеThe Big Question - VideoВидеоCGIAR's Excellence in Breeding (EiB)ЧтениеInterview with Giovanny Eduardo Covarrubias Pazaran from EiB ВидеоIntroducing AlphaSimRЧтениеAccessing Reading and Coding ActivitiesЧтениеSoftware setup - OptionalЧтениеGlossaryЧтение
03Week 2 - Relationship between DNA & Traits18 материалов
Relationship between traits and DNAЧтениеTrait to DNA VideoВидеоSimulating DNA in AlphaSimRЧтениеSimulating DNA in AlphaSimR VideoВидеоSimulating DNA in AlphaSimR - Reading R NotebookЛабораторнаяExercise introductionЧтениеSimulating DNA in AlphaSimR ExerciseЛабораторнаяSimulating Traits in AlphaSimRЧтениеSimulating Traits in AlphaSimR Video - Part 1ВидеоSimulating traits in AlphaSimR Video - Part 2ВидеоSimulating traits in AlphaSimR - Reading R NotebookЛабораторнаяExercise introductionЧтениеSimulating traits in AlphaSimR ExerciseЛабораторнаяIndependent exercise introductionЧтениеIndependent exerciseЛабораторнаяInterview with Serap Gonen from MOWIЧтениеSerap Gonen InterviewВидеоWeek 2 QuizЗадание
04Week 3 - DNA lottery18 материалов
Inheritance DiscussionОбсуждениеTheory behind DNA lotteryЧтениеTheory behind DNA lottery (continued)ЧтениеDNA lottery in AlphaSimR - Genome ЧтениеDNA lottery in AlphaSimR Genome Video - Part 1ВидеоDNA lottery in AlphaSimR Genome Video - Part 2ВидеоDNA lottery in AlphaSimR Genome - Reading R NotebookЛабораторнаяExercise introductionЧтениеDNA lottery in AlphaSimR - Genome ExerciseЛабораторнаяDNA lottery in AlphaSimR - TraitsЧтениеDNA lottery in AlphaSimR Traits VideoВидеоDNA lottery in AlphaSimR Traits Reading R NotebookЛабораторнаяExercise introductionЧтениеDNA lottery in AlphaSimR - Traits ExerciseЛабораторнаяInterview with Havard Melbo Tajet from GenoЧтениеInterview with Havard Melbo Tajet from GenoВидеоFurther readingЧтениеWeek 3 QuizЗадание
05Week 4 - Response to selection21 материалов
Selection and response to selectionЧтениеSelection and response to selection videoВидеоSelection on a single trait in AlphaSimRЧтениеSelection on a single trait in AlphaSimR Video - Part 1ВидеоSelection on a single trait in AlphaSimR Video - Part 2 (Extra)ВидеоSelection on a single trait in AlphaSimR Reading - R NotebookЛабораторнаяExercise introductionЧтениеSelection on a single trait in AlphaSimR - ExerciseЛабораторнаяDiscussion: Which traits to select on?ОбсуждениеInterview with Santiago Avendano from Aviagen - IntroductionЧтениеInterview with Dr Santiago AvendanoВидеоSelection on multiple traits in AlphaSimRЧтениеSelection on multiple traits in AlphaSimR Video - Part 1ВидеоSelection on multiple traits in AlphaSimR Video - Part 2ВидеоSelection on multiple traits in AlphaSimR Video - Part 3ВидеоSelection on multiple traits in AlphaSimR Reading - R NotebookЛабораторнаяExercise introductionЧтениеSelection on multiple traits in AlphaSimR - ExerciseЛабораторнаяSelection on multiple traits in AlphaSimR: Independent exercise ЧтениеIndependent exerciseЛабораторнаяWeek 4 QuizЗадание
06Week 5 - Modelling complex breeding programs23 материалов
Modelling Complex Breeding ProgramsЧтениеDiscussion: Population and breeding programme structureОбсуждениеComplex breeding programme in AlphaSimR - AnimalsЧтениеAnimal Breeding Programme with AlphaSimR Video - Part 1ВидеоAnimal Breeding Programme with AlphaSimR Video - Part 2ВидеоAnimal Breeding Programme with AlphaSimR Reading - R NotebookЛабораторнаяExercise introductionЧтениеAnimal Breeding Programme with AlphaSimR - ExerciseЛабораторнаяModelling complex breeding programmesЧтениеModelling complex breeding programmes videoВидеоComplex breeding programme in AlphaSimR - PlantsЧтениеPlant Breeding videoВидеоPlant Breeding Reading - R NotebookЛабораторнаяExercise introductionЧтениеPlant Breeding - ExerciseЛабораторнаяEvaluation of genomic selection strategies in wheat breedingЧтениеGenomic selection in plant breeding videoВидеоInterview with Thomas Farrugia from Beta Bugs - IntroductionЧтениеInterview with Dr Thomas FarrugiaВидео

Course Summary

Closing CommentsЧтениеClosing Comments VideoВидеоCongratulations!ЧтениеEnd of Course SurveyЧтение